Core code snippet for scikit-learn machine learning applications using the iris dataset and k-Nearest Neighbor classifier from sklearn.datasets import load_iris from sklearn.model_selection import...

Here is a non-exhaustive, most-likely-to-evolve list of my favorite books and materials. I often find my self going through these resources as a way to learn or refresh my memory, so it is a small ...

Understandably, going through a lot of publications is a necessary evil part of every researcher’s life. I’ve been wondering how to go about filtering through search results and get as much informa...

pip3 install pep8 pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available. 1 Getting this error proved to be time consuming not just because a Py...

This is a quick reference for installing the parallel version of Maker2. I wrote this a while back (about 3 years) but could be useful still. Some of the tools could have undergone major updates in...

Examples to serve as a guide for analyses using GATK. Version used is 3.2.2. It is best to consult the tool documentation for in-depth discussion of the parameters and outputs. Set paths to tools ...

This was from a workshop I have given in the lab, but could be used as a guide for future analysis as well.* Background Metagenomics involves the study of genomes found in the environment. Some m...

Here are some of the things I learned and how I devised my ‘workflow’ when writing a Django project. This is really a braindump for myself in the future. Set up the environment using virtualenv...